Dr. Chandra Sekhar Mukhopadhyay
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Dr. Chandra Sekhar Mukhopadhyay

Research Scientist
Guru Angad Dev Veterinary and Animal Sciences University, India

Highest Degree
PostDoc Fellow in Marker Assisted Selection and Functional Genomics from Iowa State University, USA

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Biography

Dr. Chandra Sekhar Mukhopadhyay obtained his Ph.D. in Animal Breeding and Genetics from National Dairy Research Institute, Karnal, India. Currently he is working as Assistant Scientist at Guru Angad Dev Veterinary and Animal Sciences University, India. His main area of interest related to Biomedical Sciences, Molecular Sciences, and Bioinformatics, and Genomic. His area of expertise includes Animal Genomics, Disease Resistance, Bioinformatics, Biostatistics, miRNA, R Programming, and Andrology. He has published 34 articles in journals contributed as author/co-author.

Area of Interest:

Animal and Veterinary Sciences
100%
Bioinformatics
62%
Genomics
90%
Disease Resistance
75%
Biostatistics
55%

Research Publications in Numbers

Books
0
Chapters
0
Articles
0
Abstracts
0

Selected Publications

  1. Jasdeep, S., C.S. Mukhopadhyay, R.S. Sethi and J.S. Arora, 2016. Correlated expression profiling of dicer1 and tlr genes across bubaline tissues vis-A-vis in PBMCs challenged with tlr agonists. Int. J. Adv. Res., 3: 929-939.
  2. Verma, G., J.S. Arora, R.S. Sethi, C.S. Mukhopadhyay and R. Verma, 2015. Handmade cloning: recent advances, potential and pitfalls. J. Anim. Sci. Biotechnol., Vol. 6. .
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  3. Singh, U. and S. Kumar, 2015. Bioinformatic Approaches for Livestock Genome Analysis., Satish Serial Publishing House, India, ISBN : 9789384053017, Pages: 314.
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  4. Singh, J., C.S. Mukhopadhyay, J.S. Arora and S. Kaur, 2015. Biocomputational characterization and evolutionary analysis of bubaline dicer1 enzyme. Asian-Aust. J. Anim. Sci., 28: 876-887.
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  5. Sarika, M.A. Iquebal, C.S. Mukhopadhyay, P.G. Koringa, A. Rai, C.G. Joshi and D. Kumar, 2015. Genome Annotation in Prokaryotes and Eukaryotes. In: Bioinformatic Approaches for Livestock Genome Analysis. Singh, U., S. Kumar, C.S. Mukhopadhyay, R. Deb and R.R. Alyethodi et al. (Ed.). Satish Serial Publishing House, Delhi, India., ISBN: 9789384053017, pp: 247-278..
  6. Sangwan, V., J. Mohindroo, A. Kumar, C.S. Mukhopadhyay and N.S. Saini, 2015. Doppler ultrasonography of common carotid artery and external jugular vein in healthy and reticulo-diaphragmatic hernia affected buffaloes. Proc. Natl. Acad. Sci. India Sec. B Biol. Sci., 85: 859-865.
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  7. Mukhopadhyay, C.S., 2015. Submitting Nucleotide sequence to Bankit. In: Bioinformatic Approaches for Livestock Genome Analysis. Singh, U., S. Kumar, C.S. Mukhopadhyay, R. Deb and R.R. Alyethodi et al. (Ed.). Satish Serial Publishing House, Delhi, India., ISBN: 9789384053017, pp: 113-136..
  8. Mukhopadhyay, C.S., 2015. Designing and In silico Quality Checking of PCR Primers. In: Bioinformatic Approaches for Livestock Genome Analysis. Singh, U., S. Kumar, C.S. Mukhopadhyay, R. Deb and R.R. Alyethodi et al. (Ed.). Satish Serial Publishing House, Delhi, India., ISBN: 9789384053017, pp: 23-76..
  9. Mukhopadhyay, C.S. and S.S. Osahan, 2015. Sequence Alignment: Concepts and Methods. In: Bioinformatic Approaches for Livestock Genome Analysis. Singh, U., S. Kumar, C.S. Mukhopadhyay, R. Deb and R.R. Alyethodi et al. (Ed.). Satish Serial Publishing House, Delhi, India., ISBN: 9789384053017, pp: 77-112..
  10. Mukhopadhyay, C.S. and S.S. Osahan, 2015. Molecular Phylogeny: Basics, Methods and Applications. In: Bioinformatic Approaches for Livestock Genome Analysis. Singh, U., S. Kumar, C.S. Mukhopadhyay, R. Deb and R.R. Alyethodi et al. (Ed.). Satish Serial Publishing House, Delhi, India., ISBN: 9789384053017, pp: 137-156..
  11. Kaur, M., R. Verma, B.K. Bansal, C.S. Mukhopadhyay and J.S. Arora, 2015. Status of sub-clinical mastitis and associated risk factors in Indian water buffalo in Doaba region of Punjab, India. Indian J. Dairy Sci., 68: 483-487.
  12. Kaur, J., C.S. Mukhopadhyay, J.K. Dhanoa, R.S. Sethi and J.S. Arora, 2015. Expression profiling and in silico characterization of bubaline drosha in light of evolution. Int. J. Adv. Res., 3: 2956-2966.
  13. Jamir, C.J., C.S. Mukhopadhyay, J.S. Arora, G.S. Brah, R. Cheema and M. Kaur, 2015. Screening of dairy breeding bulls for chromosomal profile and its andrological attributes. Indian J. Anim. Res., 49: 8-13.
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  14. Iquebal, M.A., S. Jaiswal, C.S. Mukhopadhyay, C. Sarkar, A. Rai and D. Kumar, 2015. Applications of Bioinformatics in Plant and Agriculture. In: PlantOmics: The Omics of Plant Science. Barh, D., M.S. Khan and E. Davies (Ed.). Springer, India., ISBN: 978-81-322-2171-5, pp: 755-789..
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  15. Dhaliwal, K.K., J.S. Arora, C.S. Mukhopadhyay and P.P. Dubey, 2015. In silico characterization of functional divergence of two cathelicidin variants in Indian sheep. Evol. Bioinf. Online, 11: 189-196.
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  16. Bhardwaj, R., G.S. Brah, J.S. Arora, S. Kaur and C.S. Mukhopadhyay, 2015. Cloning and molecular characterization of toll-like receptor 4 (TLR-4) gene in Indian water buffalo. Indian J. Anim. Sci., 85: 19-24.
  17. Singh, J., C.S. Mukhopadhyay, G.S. Brah and S. Saini, 2014. Z-chromosome linked dinucleotide strs: Association with reproduction traits in chicken. Indian J. Anim. Res., 48: 521-526.
  18. Mathew, E.N., G.S. Brah, B.S. Kumar, C.S. Mukhopadhyay and P.P. Dubey, 2014. Molecular cloning and characterization of the gene encoding heat shock protein 70 from the chicken (Gallus gallus). Proc. Natl. Acad. Sci. India Sec. B Biol. Sci., 84: 573-578.
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  19. Mamu, G., G.S. Brah, C.S. Mukhopadhyay, D. Deka and R. Ramneek, 2014. Molecular characterization of mannose-binding lectin protein in chickens. Indian J. Anim. Sci., 84: 34-36.
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  20. Kutchy, N.A., C.S. Mukhopadhyay, G.S. Brah and J.S. Arora, 2014. Identifying molecular and spermatological markers to detect sperm chromatin fragmentation. Indian J. Anim. Sci., 84: 267-270.
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  21. Kaur, A., C.S. Mukhopadhyay, J.S. Arora, G.S. Brah, S. Kaur and J.C. Jamir, 2014. Detection of single nucleotide polymorphism of holandric genes and association with sperm nuclear maturity in bovines. Indian J. Dairy Sci., 67: 498-503.
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  22. Jaswal, H., M.S. Bal, L.D. Singla, A. Sharma, P. Kaur, C.S. Mukhopadhyay and P.D. Juyal, 2014. Application of msp1β PCR and 16S rRNA semi nested PCR-RFLP for detection of persistent anaplasmosis in tick infested cattle. Int. J. Adv. Res., 2: 188-196.
  23. Hussain, S., C.S. Mukhopadhyay and J.S. Arora, 2014. Applications and implications of mammalian antimicrobial peptides: A review. Agric. Rev., 35: 299-306.
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  24. Chabukchara, P., S. Nayyar, C.S. Mukhopadhyay and R. Jindal, 2014. Liver function profile as related to antioxidant status in summer stressed lactating buffaloes. Indian Vet. J., 91: 15-17.
  25. Swati, G.V.R. Kumar, G.S. Brah, D. Deka, R.K. Agrawal, M.D. Ansal and C.S. Mukhopadhyay, 2013. Differential expression profiling of toll like receptors 3, 4 and 9 genes in major tissues of Indian major carp Catla catla. Indian J. Anim. Sci., 83: 983-986.
  26. Mukhopadhyay, C.S., P.P. Dubey and A.K. Gupta. 2013. Assessment of Sperm Chromatin Compactness and Integrity in Mammalian Semen Sample. In: Genetic Improvement of Livestock and Poultry. Singh, C.V. and R.S. Barwhal (Ed.). New India Publishing Agency, New Delhi, India., ISBN: 9789381450826, pp. 275-283.
  27. Mukhopadhyay, C.S. and D. Kumar, 2013. Applications of SNP-Chip in Bovine Selection. In: Advances in Cattle Research. Singh, U., S. Kumar, A. Kumar, R. Deb and A. Sharma (Ed.). Satish Serial Publishing House, Delhi, India., ISBN: 9789381226421, pp. 1-18..
  28. Khatun, M., S. Kaur, Kanchan and C.S. Mukhopadhyay, 2013. Subfertility problems leading to disposal of breeding bulls. Asian-Australasian J. Anim. Sci., 26: 303-308.
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  29. Dubey, P.P., A. Sharma, D.S. Gour, Prashant and A. Jain et al., 2013. Sequencing, single nucleotide polymorphisms identification and development of genotyping tests for leptin gene in zebu cattle (Bos indicus). Indian J. Anim. Sci., 83: 61-65.
  30. Swati, G.V.P.P.S.R. Kumar, C.S. Mukhopadhyay, G.S. Brah and M. Ansal et al., 2012. In silico analysis of evolutionary divergence of TLR9 transcript in Indian major carp Catla catla. Her. J. Biochem. Bioinf., 1: 8-13.
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  31. Kaur, D., R.K. Agrawal, C.S. Mukhopadhyay, D. Deka and Ramneek, 2012. Phylogenetic analysis of 32kDa outer membrane protein gene (lipL32) from Leptospira interrogans serovar caniclola. Ind. Vet. J., 89: 85-88.
  32. Joshi, I., S. Kumar, A. Kaur, C.S. Mukhopadhyay and D. Kumar, 2012. Homology modeling of buffalo (bubalus bubalis) interferon-tau protein. Am. J. Bioinf., 1: 79-86.
  33. Tokas, J., C.S. Mukhopadhyay and A. Verma, 2011. Self renewal of spermatogonial stem cells: the most promising multipotent cells - a review. Vet. World, 4: 234-240.
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  34. Mukhopadhyay, C.S., J. Tokas and P.D. Mathur, 2011. Prospects and ethical concerns of embryonic stem cells research-a review. Vet. World, 4: 281-286.
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  35. Mukhopadhyay, C.S., A.K. Gupta, B.R. Yadav, I.S. Chauhan, A. Gupta, T.K. Mohanty and V.S. Rainaemail, 2011. Effect of cryopreservation on sperm chromatin integrity and fertilizing potential in bovine semen. Livest. Sci., 136: 114-121.
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  36. Mukhopadhyay, C.S., A.K. Gupta, B.R. Yadav and T.K. Mohanty, 2011. Exploration of Y-chromosome specific markers to discover SNP associated with sub fertility traits in dairy bulls. Indian J. Biotechnol., 10: 178-182.
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  37. Kumar, G.V.P.P.S.R., G.S. Brah, H.N. Pawar, S.M. Shah and M.L. Chaudhary et al., 2011. Nucleotide sequence variability in TLR-5 gene in chicken and other species. Indian J. Poult. Sci., 46: 111-115.
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  38. Mukhopadhyay, C.S., R. Kumar and G.S. Brah, 2010. Gallinacin and Fowlicidin: two promising antimicrobial peptides in chickens-a review. Vet. World, 3: 297-300.
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  39. Mukhopadhyay, C.S., A.K. Gupta, B.R. Yadav, K. Khate, V.S. Raina, T.K. Mohanty and P.P. Dubey, 2010. Subfertility in males: An important cause of bull disposal in bovines. Asian-Australasian J. Anim. Sci., 23: 450-455.
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  40. Kumar, G.Y.P.P.S.R., H.N. Pawar, G.S. Brah, S.M. Shah and M.L. Chaudhary et al., 2010. Expression pattern of TLR-7 in chicken tissues by semi-quantitative peR using experion automated capillary electrophoresis system. Indian J. Poult. Sci., 45: 345-347.
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  41. Kumar, G.V.P.P.S.R., H.N. Pawar, G.S. Brah, S.M. Shah and M.L. Chaudhary et al., 2010. Semi-quantittaive differential expression of TLR-5 and TLR-7 in chicken tissues using experion automated capillary electrophoresis system. Indian J. Poult. Sci., 45: 269-272.
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  42. Kumar, G.V.P.P.S.R., H.N. Pawar, G.S. Brah, P. Mathur and M.L. Chaudhary et al., 2010. Cloning and sequence analysis of chicken toll like receptor-7 expressed sequence tag. Indian J. Poult. Sci., 45: 115-119.
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  43. Mukhopadhyay, C.S., A. Verma, P.P. Dubey, R. Jain and N. Singh, 2008. Sperm nuclear chromatin decondensation test: Its applicability to predict fertility of cryopreserved semen samples. Indian J. Anim. Res., 42: 285-287.
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  44. Mukhopadhyay, C.S., A. Verma, B.K. Joshi, A. Singh and A.K. Chakravarty et al., 2008. In vitro acrosome reaction: Its pertinence in assessing fertility of cryopreserved semen. Indian J. Anim. Res., 42: 201-204.
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  45. Mukhopadhyay, C.S., A. Verma, B.K. Joshi and A.K. Chakravar, 2008. Association of sperm mitochondrial activity index with gross seminal parameters and fertility in crossbred bulls. Indian J. Anim. Res., 42: 282-284.
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  46. Mukhopadhyay, C.S., A. Verma, B.K. Joshi and A. Singh, 2008. Prediction of fertility of crossbred bulls under field conditions using cryopreserved semen. Indian J. Dairy Sci., 61: 277-278.
  47. Dubey, P.P., A. Sharma, D.S. Gour, Prashant and A. Jain et al., 2008. Leptin gene polymorphism in Indian Sahiwal cattle by Single Strand Conformation Polymorphism (SSCP). South Afr. J. Anim. Sci., 38: 131-135.
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  48. Mukhopadhyay, C.S. and A. Verma, 2007. Prediction of fertility of frozen thawed bovine-semen using Hypo osmotic swelling test. Indian J. Anim. Prod. Manage. 23: 77-81.